Toolbox of Customized Reagents Including Antibodies, Oligonucleotides for qRT-PCR, Plasmids, Lentiviral Vectors, shRNA, and Related Molecular Tools

This activity compiles and harmonizes a comprehensive Toolbox of customized reagents supporting experimental research on the NRF2 signaling pathway. The accompanying dataset

Gene Species Reverse seq Forward seq Annealing temp Reference (PMID) Who?
ActbHTCCTTCCTGGGCATGGAGAGGAGGAGCAATGATCTTGATCTT27427974Antonio Cuadrado
ActbMTCCTTCTTGGGTATGGAAAGGAGGAGCAATGATCTTGATCTT27427974Antonio Cuadrado
Aox1MCTTTTGACCAAAGCATCAGTCTCCCCTTTCTCCCAGTCTATATTCGAAntonio Cuadrado
ASCL1HCATCTCCCCCAACTACTCCAGAAAGCCATGTCTCTCAGGCAntonio Cuadrado
Atg2bMTGATCCCAACTATCGTTCCCGCGGATCTCCATTCTCTTGCTTCAntonio Cuadrado
ATG2BHAACTCACAAACAGAATGGTTCAAAAAGGGTACCAGGAGACACCAAntonio Cuadrado
Atg3MCCATTGAAAACCATCCTCATCTCGCCTTCTGCAACTGTCTCAATAATTAntonio Cuadrado
ATG3HCATGCAGGCATGCTGAGGTGCGTTAACAGCCATTTTGCCACTAntonio Cuadrado
Atg4dMACGTCAAGTATGGTTGGGCAATGTCACCCTCTCCCTCGAAAntonio Cuadrado
ATG4DHCACATCCTCAGGAAAGCCGTGACCACAGACTTCCACTCGGAntonio Cuadrado
Atg5MATATCAGACCACGACGGAGCTTGGCTCTATCCCGTGAATCAntonio Cuadrado
ATG5HGGGAAGCAGAACCATACTATTTGAAATGTACTGTGATGTTCCAAGGAntonio Cuadrado
Atg7MGGCCTTTGAGGAATTTTTTGGACGTCTCTAGCTCCCTGCATGAntonio Cuadrado
ATG7HAGGAGATTCAACCAGAGACCGCACAAGCCCAAGAGAGGAntonio Cuadrado
BdnfMGATGCCGCAAACATGTCTATGATAATACTGTCACACACGCTCAGCTCAntonio Cuadrado
BIRC5HACCCCGGAGCGGATGGGCAACCGGACGAATGCTTTTAntonio Cuadrado
Calcoco2/Ndp52MTGGCAACTTCTCTCAGGTCCTGTTTCCTTGCGTCGAGGGATGAACTTTAntonio Cuadrado
CALCOCO2/NDP52HACCATGGAGGAGACCATCAATTCTGGACGGAATTGGAAAGAntonio Cuadrado
CatMTGACATGGTCTGGGACTTCTGGTTGATGCCCTGGTCGGTCTT6031491600Anna Grochot-Przęczek
CD44HACAAGCACAATCCAGGCAACGCTGGTATGAGCTGAGGCTGAntonio Cuadrado
CTGFHCTTCTGTGACTTCGGCTCCCGATGCAGGGAGCACCATCTTAntonio Cuadrado
CYR61HCCAAGAAATCCCCCGAACCACGGAACCGCATCTTCACAGTAntonio Cuadrado
Eff2M, HGACATCACCAAGGGTGTGCATCAGCACACTGGCATAGAGG6031491600Anna Grochot-Przęczek
Gabarapl1MGACCTCACTGTTGGCCAGTTCGTGGGAGGGATGGTGTTGTTAntonio Cuadrado
GABARAPL1HACCATGGGCCAACTGTATGATGGGCTTCCAACCACTCATTTAntonio Cuadrado
GapdhMCGACTTCAACAGCAACTCCCACTCTTCCTGGGTGGTCCAGGGTTTCTTACTCCTT30029164Antonio Cuadrado
GapdhHCTCTCTGCTCCTCCTGTTCGACTGAGCGATGTGGCTCGGCT33023162Antonio Cuadrado
GclmHACAGCGAGGAGCTTCATGATTTGTGCAACTCCAAGGACTGA6431491600Anna Grochot-Przęczek
GCLMHTCAAACTCTTCATCATCAACTTCTAATTCCTCCCAGTAAGAntonio Cuadrado
GfapMTCCTGGAACAGCAAAACAAGCAGCCTCAGGTTGGTTTCATAntonio Cuadrado
Gpx1MACGATCCGGGACTACACCACTTCTCAAACAATGTAAAATTGG6031491600Anna Grochot-Przęczek
Gpx1HTGCTGGCCTCCCCTTACAGGCACACATGGCGCAATTG6031491600Anna Grochot-Przęczek
Gstm1MATACTGGGATACTGGAACGTCCAGTCAGGGTTGTAACAGAGCATAntonio Cuadrado
Hmox1MCACAGATGGCGTCACTTCGTCGTGAGGACCCACTGGAGGAGAntonio Cuadrado
Hmox1HTGCTCAACATCCAGCTCTTTGAGCAGAATCTTGCACTTTGTTGCAntonio Cuadrado
Iba1MGTCCTTGAAGCGAATGCTGGCATTCTCAAGATGGCAGATCAntonio Cuadrado
Il-1βMCTGGTGTGTGACGTTCCCATTACCGACAGCACGAGGCTTTAntonio Cuadrado
Il-4MACAGGAGAAGGGACGCCATGAAGCCCTACAGACGAGCTCAAntonio Cuadrado
iNosMCCTCCTTTGCCTCTCACTCTTCAGTATTAGAGCGGTGGCATGGTAntonio Cuadrado
Keap1HGCACAACTGTATCTATGCTGCTCCAAGGACGTAGATTCTC6030198307Anna Grochot-Przęczek
Keap1HTACGATGTGGAAACAGAGACGTGGACTTTCGTATCAACAGGTACAGTTCTGGTCAATCTGCTTAntonio Cuadrado
Keap1MGATCGGCTGCACTGAACTGGACTCGCAGCGTACGTAntonio Cuadrado
KrasMCAAGAGCGCCTTGACGATACACCAAGAGACAGGTTTCTCCATCAntonio Cuadrado
Lamp2aMAGGTGCTTTCTGTGTCTAGAGCGTAGAATAAGTACTCCTCCCAGAGCTGCAntonio Cuadrado
Lamp2aHGTGCAACAAAGAGCAGACTGTGGCACAAGGAAGTTGTCGTCAntonio Cuadrado
Lamp2bMATGTGCTGCTGACTCTGACCTCAATGGAAGCACGAGACTGGCTTGATTAntonio Cuadrado
Lamp2BHAGAGTGTTCGCTGGATGATGTGCCAATTACGTAAGCAATCAAntonio Cuadrado
Lamp2cMGGTGCTGGTCTTTCAGGCTTGATTACCACCCAATCTAAGAGCAGGACTAntonio Cuadrado
Lamp2CHAAGGGTTCAGCCTTTCAATGACAATTATAAGGAAGCCCAAGGAntonio Cuadrado
NEUROD1HGGTGCCTTGCTATTCTAAGACGCGCAAAGCGTCTGAACGAAGGAGAntonio Cuadrado
NEUROG2HATCCGAGCAGCACTAACACGGCTGAGGCACAGTTAGAGCCAntonio Cuadrado
Nfe2l2HTTGAGCAAGTTTGGGAGGAGCTAGGAGAGGATGCTGCTGAAGG6031491600, 30198307Anna Grochot-Przęczek
Nfe2l2HAAACCAGTGGATCTGCCAACGTGACTGAAACGTAGCCGAAGAAntonio Cuadrado
Nfe2l2MCAGTCTTCACTGCCCCTCATTCTGTCAGTGTGGCTTCTGGAntonio Cuadrado
Nfe2l2MCCCGAAGCACGCTGAAGGCACCAGGCGGTGGGTCTCCGTAAntonio Cuadrado
Nox4HTCTGTGGAAAATTAGCTTGGAATTTAGATACCCACCCTCC6031491600Anna Grochot-Przęczek
Nqo1HAGGACCCTTCCGGAGTAAGACCAGGATTTGAATTCGGGCG6431491600Anna Grochot-Przęczek
Nqo1MGGTAGCGGCTCCATGTACTCCATCCTTCCAGGATCTGCATAntonio Cuadrado
NQO1HGTTCATAGGAGAGTTTGCTTCCTTGCAGAGAGTACATGGAAntonio Cuadrado
NURR1HACCACTCTTCGGGAGAATACAGGCATTTGGTACAAGCAAGGTAntonio Cuadrado
Osgin1MCGGTGACATCGCCCACTACGCTCGGACTTAGCCCACTCAntonio Cuadrado
Psmb7MTCTTCGTCCATTCTCAGTGCCGTAACTTTCTCGGTGAGGACAGCAntonio Cuadrado
Psmc3MGCTCGGTGCACTGATGACTTCCATGAGTGAGTTCCGTGGCTCAntonio Cuadrado
Psmc4MGGCCCGTCCAGATAAGATTTCTCCTTGGCCAGGACAATGTAGAntonio Cuadrado
RETHTGATGGCACTAACACTGGGTCCGCTGAGGGTGAAAGCATAntonio Cuadrado
Sod2MAGACCTGCCTTACGACTATGAGCGACCTGAGTTGTAACAT6031491600Anna Grochot-Przęczek
Sod2HCTGGACAAACCTCAGCCCTATGATGGCTTCCAGCAACTC6031491600Anna Grochot-Przęczek
SOX2HGAGCTTTGCAGGAAGTTTGCGCAAGAAGCCTCTCCTTGAAAntonio Cuadrado
Sphk2MATATTCATGGGGGCGTGTCCCAGTCCTGGACCAGCCTCTGGGTGTAntonio Cuadrado
Sqstm1/p62MGGCGCACTACCGCGATGAGGATGTTCCCGCCGGCACTCCTTAntonio Cuadrado
SQSTM1/p62HCTGGGACTGAGAAGGCTCACGCAGCTGATGGTTTGGAAATAntonio Cuadrado
TEAD1HCTGAGTCGCAGTTACCACCAAGCCTGGAGCCTTTTCAAGAntonio Cuadrado
TEAD2HACATGATGAACAGCGTCCTGCAGCAGTTCCTGGGTGTCTCAntonio Cuadrado
TEAD3HCATCGAGCAGAGCTTCCAGCGTGCAATCAACTCATTTCGAntonio Cuadrado
TEAD4HGCCTTCCACAGTAGCATGGAAAGCTCCTTGCCAAAACCAntonio Cuadrado
THHGTCCCCGCGGTTCATTGGCCTTCTCCTCAAAGGCCACAAntonio Cuadrado
Ulk1MTGCCCTTGATGAGATGTTCCAGTCTCCTCTCAATGCACAGCAntonio Cuadrado
ULK1HTCATCTTCAGCCACGCTGTCACGGTGCTGGAACATCTCAntonio Cuadrado
Wdfy1MTGTTTGCAGTATGATCTGGACACCCTTGAGGGTCGTGATAACTGAAntonio Cuadrado
WWTR1HTTTCCTCAATGGAGGGCCAGGGTGTTTGTCCTGCGTTTTAntonio Cuadrado
YAP1HGAACTGCTTCGGCAGGTGAGGGCTAACTCCTGACATTTTGGAntonio Cuadrado
Zbtb21MTTTCCTGACGTAACTCTGAGCTGGCAAGCACACATAntonio Cuadrado

lists validated qRT-PCR oligonucleotides developed by participating laboratories for use in NRF2-related projects across cellular, animal, and clinical models.
The curated reagents encompass detection and manipulation tools targeting NRF2 (NFE2L2), KEAP1, and multiple downstream effectors including HMOX1 (HO-1), NQO1, GCLM, TXNRD1, SOD2, and GSTA4. Each entry provides validated sequences or clone identifiers, experimental conditions, and references to their use in BenBedPhar-associated publications. This standardization ensures reproducibility and interoperability among partner institutions, facilitating cross-laboratory collaborations and assay comparability.
The activity builds additional scientific advances exemplified by “Molecular pharmacology and translational targeting of the NRF2–KEAP1 axis” (Free Radical Biology and Medicine, 2022), “Novel modulators and chemical probes for NRF2 signaling” (PubMed ID: 36100148), and “Cell-based and molecular tools to dissect NRF2 regulation in health and disease” (PubMed ID: 40043449). These studies demonstrate the growing application of engineered reagents in drug discovery, redox biology, and translational pharmacology.
By consolidating this toolbox, BenBedPhar provides a shared technological infrastructure that accelerates experimental standardization and data generation across the network. The reagents serve as a foundation for ongoing NRF2 pathway validation, mechanistic studies, and preclinical screening of NRF2-targeted therapeutics, directly supporting the Action’s objectives in methodological harmonization and translational readiness.